Title | An activation to memory differentiation trajectory of tumor-infiltrating lymphocytes informs metastatic melanoma outcomes. |
Publication Type | Journal Article |
Year of Publication | 2022 |
Authors | Jaiswal A, Verma A, Dannenfelser R, Melssen M, Tirosh I, Izar B, Kim T-G, Nirschl CJ, K Devi SP, Olson WC, Slingluff CL, Engelhard VH, Garraway L, Regev A, Minkis K, Yoon CH, Troyanskaya O, Elemento O, Suárez-Fariñas M, Anandasabapathy N |
Journal | Cancer Cell |
Volume | 40 |
Issue | 5 |
Pagination | 524-544.e5 |
Date Published | 2022 May 09 |
ISSN | 1878-3686 |
Keywords | Animals, CD8-Positive T-Lymphocytes, Cell Differentiation, Humans, Lymphocytes, Tumor-Infiltrating, Melanoma, Mice, Programmed Cell Death 1 Receptor |
Abstract | There is a need for better classification and understanding of tumor-infiltrating lymphocytes (TILs). Here, we applied advanced functional genomics to interrogate 9,000 human tumors and multiple single-cell sequencing sets using benchmarked T cell states, comprehensive T cell differentiation trajectories, human and mouse vaccine responses, and other human TILs. Compared with other T cell states, enrichment of T memory/resident memory programs was observed across solid tumors. Trajectory analysis of single-cell melanoma CD8+ TILs also identified a high fraction of memory/resident memory-scoring TILs in anti-PD-1 responders, which expanded post therapy. In contrast, TILs scoring highly for early T cell activation, but not exhaustion, associated with non-response. Late/persistent, but not early activation signatures, prognosticate melanoma survival, and co-express with dendritic cell and IFN-γ response programs. These data identify an activation-like state associated to poor response and suggest successful memory conversion, above resuscitation of exhaustion, is an under-appreciated aspect of successful anti-tumoral immunity. |
DOI | 10.1016/j.ccell.2022.04.005 |
Alternate Journal | Cancer Cell |
PubMed ID | 35537413 |
PubMed Central ID | PMC9122099 |
Grant List | R37 CA258829 / CA / NCI NIH HHS / United States R21 CA263381 / CA / NCI NIH HHS / United States R21 CA185955 / CA / NCI NIH HHS / United States T32 AR007098 / AR / NIAMS NIH HHS / United States K08 CA222663 / CA / NCI NIH HHS / United States P30 CA044579 / CA / NCI NIH HHS / United States R56 AR078686 / AR / NIAMS NIH HHS / United States R01 AR080436 / AR / NIAMS NIH HHS / United States R01 AR070234 / AR / NIAMS NIH HHS / United States |