An activation to memory differentiation trajectory of tumor-infiltrating lymphocytes informs metastatic melanoma outcomes.

TitleAn activation to memory differentiation trajectory of tumor-infiltrating lymphocytes informs metastatic melanoma outcomes.
Publication TypeJournal Article
Year of Publication2022
AuthorsJaiswal A, Verma A, Dannenfelser R, Melssen M, Tirosh I, Izar B, Kim T-G, Nirschl CJ, K Devi SP, Olson WC, Slingluff CL, Engelhard VH, Garraway L, Regev A, Minkis K, Yoon CH, Troyanskaya O, Elemento O, Suárez-Fariñas M, Anandasabapathy N
JournalCancer Cell
Volume40
Issue5
Pagination524-544.e5
Date Published2022 May 09
ISSN1878-3686
KeywordsAnimals, CD8-Positive T-Lymphocytes, Cell Differentiation, Humans, Lymphocytes, Tumor-Infiltrating, Melanoma, Mice, Programmed Cell Death 1 Receptor
Abstract

There is a need for better classification and understanding of tumor-infiltrating lymphocytes (TILs). Here, we applied advanced functional genomics to interrogate 9,000 human tumors and multiple single-cell sequencing sets using benchmarked T cell states, comprehensive T cell differentiation trajectories, human and mouse vaccine responses, and other human TILs. Compared with other T cell states, enrichment of T memory/resident memory programs was observed across solid tumors. Trajectory analysis of single-cell melanoma CD8+ TILs also identified a high fraction of memory/resident memory-scoring TILs in anti-PD-1 responders, which expanded post therapy. In contrast, TILs scoring highly for early T cell activation, but not exhaustion, associated with non-response. Late/persistent, but not early activation signatures, prognosticate melanoma survival, and co-express with dendritic cell and IFN-γ response programs. These data identify an activation-like state associated to poor response and suggest successful memory conversion, above resuscitation of exhaustion, is an under-appreciated aspect of successful anti-tumoral immunity.

DOI10.1016/j.ccell.2022.04.005
Alternate JournalCancer Cell
PubMed ID35537413
PubMed Central IDPMC9122099
Grant ListR37 CA258829 / CA / NCI NIH HHS / United States
R21 CA263381 / CA / NCI NIH HHS / United States
R21 CA185955 / CA / NCI NIH HHS / United States
T32 AR007098 / AR / NIAMS NIH HHS / United States
K08 CA222663 / CA / NCI NIH HHS / United States
P30 CA044579 / CA / NCI NIH HHS / United States
R56 AR078686 / AR / NIAMS NIH HHS / United States
R01 AR080436 / AR / NIAMS NIH HHS / United States
R01 AR070234 / AR / NIAMS NIH HHS / United States